logoContact ↗Contact ↗ (opens in a new tab)
  • 1. Introduction
  • 2. Logging in
  • 3. Protein database upload
  • 4. Spectral library upload
  • 5. Project
  • 6. Experiment
  • 7. Raw file upload
  • 8. SageDDA, SageDIA and SagePRM analysis
    • 9.1 Select an existing parameter file
    • 9.2 Database and Enzyme
    • 9.3 Modifications
    • 9.4 Tolerance
    • 9.5 Quantification
    • 9.6 Sample annotation
    • 9.7 Review and Submit
    • 9.8 View and Download Results
    • 10.1 Select an existing parameter file
    • 10.2 Spectral Library & Params
    • 10.3 Review and Submit
    • 10.4 View and Download Results
    • 11.1 Coming soon
  • 12. View and download results
  • 13. Quality control
  • 14. Command line tools
    • 14.1 mzParquet Converter
    • 14.2 SageDDA command line how-to
      • 14.3.1 SageDIA Command line how-to
      • 14.3.2 SageDIA parameters
  • Algorithms
    • 15.1 Overview
    • 15.2 Label-Free Quantification (LFQ)
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14. Command line tools

Command line tools

SageDDA, SageDIA, and SagePRM read mzparquet by default.

13. Quality control14.1 mzParquet Converter
Chaparral Labs, Inc