logoContact ↗Contact ↗ (opens in a new tab)
  • 1. Introduction
  • 2. Logging in
  • 3. Protein database upload
  • 4. Spectral library upload
  • 5. Project
  • 6. Experiment
  • 7. Raw file upload
  • 8. SageDDA, SageDIA and SagePRM analysis
    • 9.1 Select an existing parameter file
    • 9.2 Database and Enzyme
    • 9.3 Modifications
    • 9.4 Tolerance
    • 9.5 Quantification
    • 9.6 Sample annotation
    • 9.7 Review and Submit
    • 9.8 View and Download Results
    • 10.1 Select an existing parameter file
    • 10.2 Spectral Library & Params
    • 10.3 Review and Submit
    • 10.4 View and Download Results
    • 11.1 Coming soon
  • 12. View and download results
  • 13. Quality control
  • 14. Command line tools
    • 14.1 mzParquet Converter
    • 14.2 SageDDA command line how-to
      • 14.3.1 SageDIA Command line how-to
      • 14.3.2 SageDIA parameters
  • Algorithms
    • 15.1 Overview
    • 15.2 Label-Free Quantification (LFQ)
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13. Quality control

Quality control

Click on a project and then click an experiment. In the Action column of a search, click on '...' and then select the 'View QC Plots' menu.



After click 'View QC Plots', the QC plot will display the distributions of the PSM scores of the decoy and target hits, as well as the delta mass and number of confident identifications in each sample or spectral file.


12. View and download results14. Command line tools

Chaparral Labs, Inc